U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX155796: Capsaspora owczarzaki ATCC 30864 RNA Sequencing
2 ILLUMINA (Illumina HiSeq 2000) runs: 22.6M spots, 3.4G bases, 1.5Gb downloads

UUID: 20927c0d-5228-4c71-a89a-2a2df39c7959
Design: RNA was converted into cDNA libraries and sequenced on Illumina
Submitted by: Broad Institute (BI)
Study: An amoeboid symbiont of a pulmonate snail
show Abstracthide Abstract
<b><i>Capsaspora owczarzaki</i></b> is being sequenced as part of the "Origins of Multicellularity" sequencing project conducted at the Broad Institute. To date, 625 contigs have been assembled into 84 scaffolds with annotation. Knowledge of the Capsaspora genome sequence would provide insights into host-parasite coevolution in the <i>Capsaspora-Schistosoma</i> system, but more importantly, it might also be used to develop strategies in the control of Schistosomiasis, a devastating human disease.
Sample: Generic sample from Capsaspora owczarzaki ATCC 30864
SAMN01057515 • SRS346849 • All experiments • All runs
Library:
Name: Solexa-80906
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward77  reverse

Experiment attributes: (show all 7 attributes...) (hide...)
gssr_id: 135217.0
lsid: broadinstitute.org:bsp.prod.sample:2C21W
material_type: RNA:Total RNA
project: D1060
root_sample_id: SM-26RFI
sample_id: SM-2C21W
work_request: 28606
Pipeline: show...hide...
NameStepProgramVersionNotes
base caller2012-02-11 15:29:56.0GAPipelineRTA1.12.4.2Sequencer Application 1.4.8
Runs: 2 runs, 22.6M spots, 3.4G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR51547411,280,2641.7G794.9Mb2012-06-24
SRR51548011,279,3801.7G785Mb2012-06-24

ID:
197056

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...